Scaffold Ga0209120_1017931

Overview

Basic Information

• Taxon OID: 3300025462
• Scaffold ID: Ga0209120_1017931
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1411
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209120_10179311	F080247	N/A	MIVWGKVIECAIDETVNYLNGELFGNRLWIKGKFLVFGNLFTTVKTVMVSLSEEREVQECHPIDATFMAYYQGMVAIMSFYFKDKDLYANISLTDPETIKSFINMSSFYKKYGISIPNLLDKIMYRKVPT
Ga0209120_10179312	F076263	N/A	MISLEDLSAILDDLEDLCARLPEDVKFHPVLEIRRGYANEEATYIKFDCQNHRYILTVIKEGVAKTTRYSSREELFRRLFPDYTGVGII
Ga0209120_10179313	F081547	GGTGG	MSYLRGVFVNFGTETYYLSCGIVKGGNLDAETYTISNPELMMVRLGRDLYIVTNDLKQLIPIEPIRQLLTSETSKVYNEATVQGNEVRPT
Ga0209120_10179314	F087442	GAGG	MMREGLVKAGNLVIDCKPCYITGTGFTKDNVYVVSEGAVVFKWYDKIALITVSQEGVKITLLDIIDVRFLVERNESCWVTKL