Scaffold Ga0209120_1016075

Overview

Basic Information

• Taxon OID: 3300025462
• Scaffold ID: Ga0209120_1016075
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1524
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209120_10160751	F011097	AGAAGG	MIRDIPLYTSGGTDAFTGLSVGGSPITGNGSNYQVLRFHPNYARLMIFITGLSGTSPSIQFTIGSPYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTNAQVLQQVELPYNIFLNGVSVSWSVSGTSPSITAYIHFEFEDEEEDE
Ga0209120_10160752	F008949	AGGAGG	MSNQSVKLGTQTITPKVQDMGNSYYIELQVKITRYSGDSVNHTIDVKFTCIKYKQVVVPSTNPLSPPTVKTVEKTIQECVDEWYDTHKSVYEVA
Ga0209120_10160753	F076262	AGGTGG	MSFNPVIKGSYTLVSPQSVSVAASSSSPVSISFTPLGAGELYVYITLPSGVTASISIGGQSVSLSNGGNQFIIPANTPIDNITINNSNLSAVSVVVWALFIEVA