Scaffold Ga0209120_1011573

Overview

Basic Information

• Taxon OID: 3300025462
• Scaffold ID: Ga0209120_1011573
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1930
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209120_10115732	F087442	GAGG	MMREGLVKAGNLIIDCKPCYIAGTGFTKDNIYIISEGTAVFKSYDKIALITVSQEGVKTILLDIIDVRFLVERNENCMVTKL
Ga0209120_10115733	F080245	N/A	VIFVWTAKVVMPGFRDEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLDDSLMKKLEETSIEDLNYPLNTIDHVFT
Ga0209120_10115734	F075084	GAG	MRPCRKDLCLMYSLGVDYARLLEFTEQNPTGKLFRRAERAMIYGRRLLASWYGYDTRMLMETALKRILKKSIIFCNLMKRSGLESEYCRRYTYYDEVPCELTSEYDVEVAYADIMHMITNYNNETISQILTNMTKECSTYEVRG