NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1009210

Scaffold Ga0209120_1009210


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1009210 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2270
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10092102F076263N/AMLSAEDLSAILDDLEDLCARIPEGVNFHPTLEIRRHYANEEATYIKFDCRNHRYILTIVRMGIAKTTRYSSREELFRRLFPEYPGEEVI
Ga0209120_10092103F081547AGGAGGMSYLRGVFINFNEETYYLSCGIVKGGSLDTETYTINNPELMMVRLGRDLYVVTSELKLLIPVEPIRVLLNSETSKVYNEASSQGNEVKLT
Ga0209120_10092104F087442GAGGMMREGLVKAGDLVIDCKPCYIAGAGFTKDDIYVVSEGTVVFKWYDKIAVITVSEEGTKVNLLDIIDVRFLVERNETCMVTKL
Ga0209120_10092105F080245N/AVIFVWSARVIIPGFREEIFVSPALINGYTKITEDVYEAGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNTPLNTIDHVFT
Ga0209120_10092107F075084N/AVDYARLIEFTNQNPTGRLFRRAGRAMIYARRLTASWYGYDTGVLLERALRRILKWSINYCRVMGKLGLQSEYCRRYTYYDEVPCEPVSEYDVEVAYSRIIHMIADYSSETVSKLLTEMTRECSTYEVR
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