Scaffold Ga0209120_1000756

Overview

Basic Information

• Taxon OID: 3300025462
• Scaffold ID: Ga0209120_1000756
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13101
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209120_100075617	F070317	GGA	MSSVEEIKELNLEKITKDAQEGEVCIVNKILKGKLTEIMPLIRDPASLSQKAMEFIQRRGNDIFYLFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKIIKIGDEINIFYNPEKRRYDFVL
Ga0209120_100075618	F077502	GAG	MPTHGTDTAHIILWIEQNLPEEGKLSELIESIFSLIQEIILNNLSQGKQPITFTSVREIADAFKEMIYRSVEQSIGTLTDEVKNQIDTYFFKKLSDIYDKYYS
Ga0209120_100075620	F077499	AGGTGG	MTDLFIFPNESLKAVGYPRITNAEIIYILTITVPIRDHPDTDAPMEEKMKFLSAYLPLEFQKIQYMKAIDKALNILRYSLYSREDNVLLELANKINDTYEVKKLIDKIRDTECAEDISNIKVTLTEARRYIYPDLSLSKYASAQAKQLNIRKYEYYARVFQCYVNQDKNLDMLTLFRVSNTVYNFIRLNNLTNIIKKMQFKNDKIAQLAEKIRQRVNITLEAMGEKKITQPDENLLNSITIKIKEIDLG
Ga0209120_100075621	F056742	AGG	MKLADCRYKCKQAYFRKSIFVKMFVKEVEKVYGVRLRTCEDFCKFYVLFLSVAEMLYGKHYNHAIFKAIVRGKPNLYMCIKCEQPFTAEESITHTLQHMKQLGYKPLAYKENI
Ga0209120_10007564	F087445	N/A	MVKPGDDLIQRLMNMSEYELKRVFKMIPIDKRLALALDAIQEYQSIQTKFNNLLNGLAMNSPKVREVVENARKNRKPIDRFVDMIMDMMETMMKSKAMSLTDEDRAKLREKLKQVMESEE
Ga0209120_10007566	F076264	AGGTGG	MSSISGAIQSMVNGLQNLFTAIVQVFGCAVNAIGNTLSSLASPIGYLIGVLAVFGSLIAIIWYAFRGRGGIGGLVGSIKNFFTGFL
Ga0209120_10007567	F076264	AGG	MSSISNAIQNMVNGLQNLFVAIINVFGNAVDAIGNTLSSLASPIGYLIGVLAVFSSLIGIIWYVFRGRGGIGGLVGSIRDFFTGFL