Scaffold Ga0208562_1000381

Overview

Basic Information

• Taxon OID: 3300025460
• Scaffold ID: Ga0208562_1000381
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24584
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072410	Metagenome / Metatranscriptome	121	Y
F105678	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208562_10003811	F072410	N/A	HKPGRFNPQNLSVQFTILHPQIVASRDRHPLQSRNSLFLLALLWSLWEFELWALPVIAVLGALTKESFVPFSIVLTSAWWFSIRADRNPERNHFSPVSPWILSSWVLSLAAMIGLQWSITGRFVSPLQFGLALHRGDDYLGHFASSLHDRNLWYIFLWLLPTAIPNLKRLPKSWLIPVGATCAMAFVLDAYFGGAPGTVGRELFSIAGPVLSLSSALFLLRIAG
Ga0208562_100038122	F105678	N/A	QFTCNPPLILPDGFTKGASFNLGQGNFTPLYSQLVADGAEVILVAQDIPAVLLVNVANGTTTPIPLARQGFGSSFPLSASASTDGSQVYVAACDQYAQDGTTCVEGSVHIVCTTACTTGQGDYQQVPYVNVNDNNDRNMCNNLGYSVPVCLPNLVAIKPQ