NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208376_1002119

Scaffold Ga0208376_1002119


Overview

Basic Information
Taxon OID3300025455 Open in IMG/M
Scaffold IDGa0208376_1002119 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5417
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F008812Metagenome / Metatranscriptome327Y
F057320Metagenome / Metatranscriptome136Y
F089832Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208376_10021193F008812GAGGMIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYAIQYCLMAYDPNVDKVFYLHETGIWHDYAPQQRRYTTTPQPYQDQGATAVASSYGSQGTPPHRYGQSPQANTNPIR
Ga0208376_10021194F089832AGGGGGMSKYYIKCGTLELIYSTDKKPMAAAADVLWESNKFDVLDEHFYVDERGFKDYATALPDTKVYQTEKIVTKAGWTLE
Ga0208376_10021195F057320AGGAMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENKQEAEFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGQLTCHGYLTEVARPMPNCNDPDCGECFESCCKNGAAISQVVYDLREHGLEYNDAHKGNFGYVRRRGSWIPVTIDVGVESFGEWDEDIYGQFDYDENEYDDSGCGCIICQQQGGC
Ga0208376_10021196F000325AGGAGMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARVAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADSDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
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