NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208039_1061838

Scaffold Ga0208039_1061838


Overview

Basic Information
Taxon OID3300025454 Open in IMG/M
Scaffold IDGa0208039_1061838 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)676
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023727Metagenome209Y
F098115Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208039_10618381F023727GAGGMLHMMKHSPVMFGAVLLMVAMAMAQSQREREALSVQGYQGRASVIRYQGRVFVDAQALAQITNGSLSFEKNRIILTLPSPDGSSSSGDAQTSDLSRPFIMAAIEAMASIREWGGTLQAVVQNGYPVGNTTAGNTI
Ga0208039_10618382F098115N/AADQMFDCESRLAELKKKYYKKFNKVLPALTVTKFFQLERRIDLMMDMQVEAALPPLTEAQYTVPGSSVAEPPQQ

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