NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208455_1070827

Scaffold Ga0208455_1070827


Overview

Basic Information
Taxon OID3300025453 Open in IMG/M
Scaffold IDGa0208455_1070827 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)704
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012307Metagenome / Metatranscriptome282Y
F057829Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208455_10708271F057829N/AWFVTETALSDSNLTPLELGNLGALCSYGLTIGSGYGTCPCTLEDYDF
Ga0208455_10708272F012307AGGAGGMKKLGLLFLPILAITLMLGGNAFATAPVEGGDGSGYFVTYYSNANTTGAPDGALRIIND

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