NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208455_1001241

Scaffold Ga0208455_1001241


Overview

Basic Information
Taxon OID3300025453 Open in IMG/M
Scaffold IDGa0208455_1001241 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8385
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011360Metagenome / Metatranscriptome291Y
F056257Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0208455_100124114F056257N/AMTKLNLHGEPLADYVRHSTNSGEYCEVTYRLMSDGVLLKLTAWGRYSEARVKQATSYKSGWKIAKLTPEIMANPHLLLTQGFQKKERHPTSL
Ga0208455_100124116F011360N/AVATMATYGEWIMKSARIGASLGGVGGFFLGACIMATSATLSWTDVLDALESVVVVLMSAVIIGSFCIAIGWLAGLVLGIVAAPLGSFTERLAEKQKGNRHEARN

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