Scaffold Ga0208426_1000188

Overview

Basic Information

• Taxon OID: 3300025451
• Scaffold ID: Ga0208426_1000188
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10385
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021940	Metagenome	216	N
F039996	Metagenome	162	Y
F068580	Metagenome	124	N
F088504	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208426_100018812	F039996	N/A	MTITDITTRHDLADACPIRDIAEPVEFALDARLRITISRFANGSPITSDRLADIIIKSLAAEGITLAP
Ga0208426_100018813	F021940	AGG	MTTDIDINAAIGLLRSRGFSVTHPEASEWITPIDLWRTQGAGTTLASFRDRLHHQRCPAYPRHVGATGRTTTLRPTAELIAFLLQPSQPGKRLK
Ga0208426_10001882	F088504	N/A	MKTPEQLYAHQASLPGLRSYFIVWERPHGSYTWTQLGDMFTERDKANEFAKQRVDHKERPICDCVVSESKMARMPEPEGSEPVALLAEEKRGYLYYGKGHAR
Ga0208426_10001883	F068580	AGG	VKIYKNTHKGAPLMDAIDEYATTYEARNAAARVDLWRRVKVHMAIKIRVEEKEVTDKDLAYFVRRMGPTYLIRKIHTMTTATADHLLLWATNAEAQ