Scaffold Ga0208744

Basic Information
Taxon OID	3300025450 Open in IMG/M
Scaffold ID	Ga0208744_1005376 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025450 Open in IMG/M

Scaffold ID

Ga0208744_1005376 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3061
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3061

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F039102	Metagenome / Metatranscriptome	164	N
F043229	Metagenome / Metatranscriptome	156	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208744_10053761	F043229	N/A	IEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICDLKKKIKRIDPEWILVNEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICKCCSCLEKRKIHQQTLDETRSEKSTPYEGSRNKFSN
Ga0208744_10053763	F019779	N/A	MKDHPAIDFIPIDAEGEEDRYSETLDSPDIKNEIECSSERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKKEEILKNIRKGFSIIDDIVLYTTTFINEANKAKVEKFKGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI
Ga0208744_10053764	F039102	N/A	MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPRLVEFMTETSKVTHSDKIEPMETEEVPKPSSSN
Ga0208744_10053765	F045559	N/A	MDLTSENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLCGTDFSNESLMHHRMNRIHALKWKIKNIDPNWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS
Ga0208744_10053766	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITSIDPSWSFYDSNDYLIDKILKYINAINSNKEWNHEDNIKLFTEVRRNMVVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208744_1005376

Overview

Ecosystem & Geography

Associated Families

Sequences