NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208424_1000992

Scaffold Ga0208424_1000992


Overview

Basic Information
Taxon OID3300025445 Open in IMG/M
Scaffold IDGa0208424_1000992 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F005878Metagenome / Metatranscriptome387Y
F009683Metagenome / Metatranscriptome314Y
F099166Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208424_10009922F009683GGAGMSERSLSDWLSDAGDTLEDRGMEYGDPRHNLYRIYKIARELGIQLRDPADVALIFIATKLSRMVESPEREDSYLDLIGYSAILSRCRFSTPEDWDDVESDSQYK
Ga0208424_10009923F000645GGAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADGAPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPSSTPKKPIQTTSAKLGEFVKEQRPNDPEPIVWDVSEMANQLGAEIVDEIPLCSHGPMILKQGTKEGKEYRGWVCPERDKSAQCPAKWMKIGSDGSWYFQK
Ga0208424_10009924F005878N/AMSLEVHPFKCGNCKKVTAQREIKRYMTADVPELPGETWLMECQNCFEMRMIDPVERLASKEDDITRCDQCGNYKMKAAKCRICLIADGQERIKERYWTGGATLERFLDADI
Ga0208424_10009925F099166GGAMTIKDLSLKLAAISLLADQAKRLKDELRAELQKEMESLGADRVKAELGDEVVAYITTTKPKFKWVIKSDRKALEWFKAYHPGEVIETIRPSSLEAILAKFNYDGDSVIDPNGEVVDWLEGSLAEPYLTTKFHGDGRAILRDALIGLKRNELDVKEILELEG
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