Scaffold Ga0208424_1000892

Overview

Basic Information

• Taxon OID: 3300025445
• Scaffold ID: Ga0208424_1000892
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3438
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F024784	Metagenome	204	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_10008925	F093530	N/A	MRNVYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKRENEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVNNFYKVTQNKLAILGNGVEGLKDYIDAWYQSSIGVSSP
Ga0208424_10008926	F002037	N/A	MSKTYWVFIIVMAALAIFWTEETFSQTTTILAPDGSVTVCQVGSNGIVICV
Ga0208424_10008928	F024784	GGAG	MGRAEKILEVIVWLLIVGGMGWFAYGCYELIDLFFLRG
Ga0208424_10008929	F011384	GGAG	MYTKLDDQRQAKFVIGYITAHPGCSIKEIVQECVIARTRLKYLESEGYLILPKWTYNNTLDKRFKNRTYVSVTVGREYGKWDEQKRY