Scaffold Ga0208424_1000876

Overview

Basic Information

• Taxon OID: 3300025445
• Scaffold ID: Ga0208424_1000876
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3482
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F022191	Metagenome	215	N
F084179	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_10008763	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMATAQVPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAMRNGEDVTAAALMRLIGHDRDIVTAVYSSRSLETHWHVHPIKGEEPDESGLQRVERASIGFCKIKVPVFKKIALGNIDRAAMLVDPNKAPKLVPELFPMELRGRNTPLHRLQQIWAALSEVKNDEVLRARIERELTIRYDEPNSYISEDFGFCDLARAAGYDIWMDTLMVLGHQASVTVPIESGKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK
Ga0208424_10008767	F022191	AGGCGG	VGQRAGTVGAMPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPVAATVSG
Ga0208424_10008768	F084179	N/A	VGEDGREMWTKVGNWLFTSGLIRGERVLVRKIWGSGDDTDAEYEVVRRLDVNEPAEERRAESGSDSGSEFVAPVVAHESALSEQQTPKASLDAQQTPVAILPQFQREEPDYPRKPESGEDYIARIRAEAAMWANGQGR