NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208424_1000409

Scaffold Ga0208424_1000409


Overview

Basic Information
Taxon OID3300025445 Open in IMG/M
Scaffold IDGa0208424_1000409 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5209
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F014261Metagenome264Y
F105031Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208424_100040910F105031N/AMPDPSHRPYKPMTIIRPNAKPALWWLFPWSYARTLHTAANALRALCDRQDKALEMQAHIIVDQSEEIANLRRRVEDLNEIIHGYRPGL
Ga0208424_100040911F000957N/AMSAFKHLDGMVALLSEIYEINERVMCGDLCSAKTAIASTKMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV
Ga0208424_10004096F003583N/AMPKRKPSPEPSAGSNLLLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIRSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQNAS
Ga0208424_10004097F014261N/AMKSLIALSFLIIFGWLAVVTFCGPELARAINGPEPVNAKVVNRRAR
Ga0208424_10004098F003714N/AMPNANHPYTDHLTFAGRPIPLKRPMAVYAANRLQAILPQIAALNAAGKSQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYNTKK
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