Scaffold Ga0208424

Basic Information
Taxon OID	3300025445 Open in IMG/M
Scaffold ID	Ga0208424_1000244 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208424_1000244 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6766
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6766

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F016263	Metagenome / Metatranscriptome	248	Y
F026539	Metagenome / Metatranscriptome	197	Y
F100733	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100024412	F016263	AGGAGG	MAKCGVCGWSFSGWAMTKHAETPCGVEDSKAEARPYAPEMEINDIIKQLEEDKANG
Ga0208424_100024414	F002827	GGTGG	MNKEYYQAKADLCRDLAVKQMVEGDSKRAGENLIRMVNALNELNLINYKEEKENETN
Ga0208424_100024415	F005146	AGGAGG	MKLTNFYEVMDSKGDIAWGGASASEAVKWFRRSLDSSVFVSVWDEEDPEEPRLVTDKIPVTHLILVTIVSEREKAR
Ga0208424_100024417	F006743	GGAGG	VRIKDSPKNMPGLRLVGEDENGRAYSNYGPVRAGLTTTHRTQQVQLSELLNCLEREVESLNSKYCEAYVTLINVMESLVKLTALLLPTSTTKEAK
Ga0208424_100024420	F026539	N/A	MTETHPAAGDIVFSVARSIFSRYRNFVEREDVVQECWSWYYSRAEHFNQLLSEESTVQRVINEKRMAWQMKRHAERYARREKATRSGYKLTDEAFYDTVIIAQLLPHVIASVVDNTVLEQAQNLINDGQPKKQSAPAEGGNLLATLIDIKKAYLKLDVVDKDILIKRYHENLTLQELATYLECATSTADRRCQNSLRRLQNNLGGESPYQ
Ga0208424_10002444	F100733	AGGA	VRKRNTETRFACSCNGCRNYPTYPAQIWHEQQIPSKEQGTFFFRKDTMKFFSSRIADFKAINRGGEIDSLSVIVSSRHGYEGASRYYEVVVLCPYGTIHREGESFDTLRKARKEWDNVLAGFAPCSCHGCELDREAGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208424_1000244

Overview

Ecosystem & Geography

Associated Families

Sequences