Scaffold Ga0208424_1000098

Overview

Basic Information

• Taxon OID: 3300025445
• Scaffold ID: Ga0208424_1000098
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10397
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F045069	Metagenome	153	N
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100009810	F037206	AGGGGG	MKCQHCGSKTHVVNTTQQPGGIRRQRRCPSCKNNAYSAEVWVAGNVTVGKSIYTKDEAALIKKKGVDARRANEDRRKKDAT
Ga0208424_100009815	F045069	AGGAG	MRYLFLLLATPAIAAQPGYLTYTNDISVQTVLTQDRPDWCHGMKMAFDIDGLDRAYYGCWALSQGFVHIEMLDGGKRIIPISRFIKPKEEAK
Ga0208424_10000988	F102853	GAG	MKEFVVVYYAAIVVATVGFLALFVPDQPRPTPSDCAVVEFGPDMSTRDREVCRQLRQHRHRM