Scaffold Ga0208424_1000016

Overview

Basic Information

• Taxon OID: 3300025445
• Scaffold ID: Ga0208424_1000016
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29734
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (94.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F033724	Metagenome / Metatranscriptome	176	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F046258	Metagenome	151	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100001610	F009140	AGGA	MRLNLTHKTLLKRLTDGPRAMFELTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTQYGRMEMNRAVSGAAMRIENGSVREKYDGRELRRSVFRAGCYDFLNHPSRFGDNLVYHKGKI
Ga0208424_100001613	F046258	GAGG	MKLLTIAMRQVLSLLETVIGPPNVPTLQREITPGRKTLPSTLITDPKFVYQSAACTDITQTFEKAKNERLQRLLNDANGNRKQNESTEQQVSKQKLRRVHG
Ga0208424_100001617	F020138	AGG	MNQQQTNRLEAFWQDVEAHKALNPSMPEQALVILKSVALDALLAAQDIELIGVNDENN
Ga0208424_100001618	F011742	AGGAG	MRTIDFVPFEWDDPDFNPEIDRIEVDYEWHEGDLSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEINENDKKAFNDD
Ga0208424_100001628	F033724	GAG	MPRPQSELTSVSKTVSARLAPAHYAEWKRLGGIEWLRQYLSQSIKNREQQKPR
Ga0208424_10000163	F097199	AGGA	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEDKQREAYGSLRHGVRMQMIEAGYCVTCYNFMAHCECDYE
Ga0208424_10000164	F034503	AGGA	MNKNEAHQLLDKRKQGLAVPQYLVNRALVVSGDISMACPPCQTARMEGSGMAQGEGVRGLPYPLMAWDNPGFNQRNEGTQ
Ga0208424_10000168	F040534	AGGAG	MNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRSVGNGEILIRLMERNELYDDFKDHMTRGKK