NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208189_1037723

Scaffold Ga0208189_1037723


Overview

Basic Information
Taxon OID3300025444 Open in IMG/M
Scaffold IDGa0208189_1037723 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)952
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015526Metagenome / Metatranscriptome254Y
F060241Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0208189_10377231F060241AGGAMSAGVSPALSQVTASTRGVPRYKLTVPLALTVLRAGIPNQIPGRAFEIGEGGMGVVPASQLLVG
Ga0208189_10377232F015526N/ARTDMQFGNDLAVVVYTQPLVPYKQLSQTYSVHSTYELKKRLGLNVSFAHSAAHSGMRPDLNPADYPAFGPGTTTPALFAGALGIGAGPVSQVNVPQTLIGATGNYHLRAGFDGGLRFNYGSYTDNTIWNTPAYRPDVNGKLQSYSVFFGRVW

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