Scaffold Ga0208034

Basic Information
Taxon OID	3300025442 Open in IMG/M
Scaffold ID	Ga0208034_1006190 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208034_1006190 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4734
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4734

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F098482	Metagenome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208034_10061901	F098482	N/A	ENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLITVKPEELAGAAVRKYLFPEPFVFDRQGYPYWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIMAHWKTLQDYPQVVVTPTQAMVIDDGDALFDRHPEVARYNDEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRTSILAQLRTMEPSSKVLEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLAIYNEPIPVTTAMDIAREEWVELFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIEASGMYLEIYAELVKLVFDRELTLEPPRNPDGAVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPISWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDTEAPPQVTTVALPAVNGFEQRLRDIALKQEDRQKIEAELKLFQAQVGQRVTVKPVTYHNPKTCQDEPAAEVFLEGKSEPLCWISREQVSTVTRELTGILVSNGKYSLKALCPLPEQGAQS
Ga0208034_10061905	F003859	GGAG	MDEQNPEKDTSLERSSSPGSSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFDEVVRKVQEYSTESGDPLDTLKARLPALCALERLAYPAPTVPRNKAGLTLGILIAALLGSIGMGALIGLGTGMAHWIAHLFA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208034_1006190

Overview

Ecosystem & Geography

Associated Families

Sequences