NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208456_1011770

Scaffold Ga0208456_1011770


Overview

Basic Information
Taxon OID3300025441 Open in IMG/M
Scaffold IDGa0208456_1011770 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011165Metagenome / Metatranscriptome294Y
F033129Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0208456_10117701F011165N/ALERRVGEIASRRARRQLMQVPWDRFRKAYEEYIRWQAFVLWARAIVELEGSAPSWLKPILRKRCPGFTEDAGRSNEPGLLGLQLLPWVHNQAFGYAKREGWLDALVFYGFRDTRSQGYWTYWEHCESEWKKRRPTSVPTFAQWRRSALKWKLQGDVSCAATAKAVEEYIDFEAFVYWLCPLFQVPTIQLPAHVALELGEESPSLLEFVRREVSAAYEDKSRRWQRLFNWGKDHVLSHARKEGWLDFVLRQARIHPRHVRMSDYARLWGGSRAENPTSPHPSFGEWRKEAESYVRTSRK
Ga0208456_10117702F033129N/ASSGLGRAELWRRIRRLKRHSDRRLHQRTAWRPEDDEILRKGYGRGWKGKRDAVRELLRRHPGWQPHSIWRRAATLGLVVKTPRKDRQRSRQPWTDDDDRSLLTMAGYKTAKFIGKVLHRSDTAIRYRLAVLGKSSRVHLEGYARRTLAQELHLGSRTIQRLIAEGLLEVRDPRITRNSIEEAYKTGRLARPLDDHQPRTEELALSPREEENAGTPSNDSISAAPRDSSKLPRSCRAKRIWADLARQLGVDAGVIEHLVFLGVLKLYDPRVTEESLTKFCARYGALIKTDFLDEETRDWLASSMDLAPAAGKVVAQGMEAFRKHALVVRTCEHCGRTIRGNVFFRHNKRCPPLNARPGSTE
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