NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208103_1004195

Scaffold Ga0208103_1004195


Overview

Basic Information
Taxon OID3300025436 Open in IMG/M
Scaffold IDGa0208103_1004195 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2438
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y
F102808Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208103_10041951F001915AGGAGMEWKLAHPMYDVADIVWMSDTFFGTEADGILKRDKAIFTKNVTIASTVQLFDKNREFIAVCRTDDERLLGFCWYDRGGYTTYANEEISNAKFHHVDLTLPAKTRVKLVHQMIDQHILWANMCGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWLRTEEGMKCLMK
Ga0208103_10041952F012670GAGGMFDEIRPEGSLVSSEKKLAASKARYAQKKAMKIATGELIPEIKPAIVGPSRTKSIVNRVTEYGALFNKLNEERIAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLMAIRKV
Ga0208103_10041956F099270AGGMNTNFQYAQAPNRKGNVSKHTPSHSGGVTAVTAAKHGTATPKGSQGAPAANGNITGRHQKVQVSTHADYCGTIKNDGYMDKSTKNYLG
Ga0208103_10041957F040590N/AMSGYGTIISGGARMTKGLTKGINEKLEEYAESHKMSAMLANSVRKAFNQNPLSDQHLNDINVKAAKKFTTPKLPAKI
Ga0208103_10041958F102808AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDFVGKPKEDQYQVAKNALEGKKIPSDYMTE
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