NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208618_1007569

Scaffold Ga0208618_1007569


Overview

Basic Information
Taxon OID3300025435 Open in IMG/M
Scaffold IDGa0208618_1007569 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2790
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F016361Metagenome / Metatranscriptome247Y
F018161Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0208618_10075692F016361N/AMCKKKELTKEPLIDGVNRPIGERSIPILMSKQLALMALMDTMTITMDPEKGKKVFQEIVSIMKELKNMEARCTC
Ga0208618_10075695F008351N/AMNSDQETEPLETCSEELVHTVKESVEKLFSLMNTEFSRSSISNEEEDFSLLKQMCEAKANILKDNPSWSTFDPTTMLAGIAVGRIDWLDIEGPWDGVKNIENYKVIKKHLRELREYNPHWKLDEQDVIKRSTCHNCGTVKSIPEKETPLKEYTGQQKN
Ga0208618_10075696F018161N/AMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQRDTSEEGKPFPALNSKNHNGN
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