Scaffold Ga0208646_1005786

Overview

Basic Information

• Taxon OID: 3300025425
• Scaffold ID: Ga0208646_1005786
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4082
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021087	Metagenome	220	N
F022159	Metagenome / Metatranscriptome	215	N
F025231	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208646_10057863	F021087	GGA	MFNMTLEQHLEEMGIRSPKTLIDTLESILDPRWQYQQKGYYNDPRDRNGEVPF
Ga0208646_10057865	F022159	GGAG	MTLDTRMVSMVLAENANEFITVKFLTKDNEERTYNGRLNVKKYLVGGERGRKAADVLKAHNLIPMFVGKDGEKPKYKSFCIDRVLAMKAGGRHIHGMGNEIV
Ga0208646_10057868	F025231	AGGAG	MEVREKYYEVYIDGDLYHEGSFEDCRYYALHALDDDCAEVYEVTVTEEKVVI