Scaffold Ga0208646_1000009

Overview

Basic Information

• Taxon OID: 3300025425
• Scaffold ID: Ga0208646_1000009
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147918
• Total Scaffold Genes: 219
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 176 (80.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024091	Metagenome / Metatranscriptome	207	Y
F045051	Metagenome / Metatranscriptome	153	Y
F056914	Metagenome	137	Y
F087754	Metagenome / Metatranscriptome	110	N
F098946	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208646_1000009115	F045051	AGGAG	MLHTIESLIERINVMKDKAIQLHRIRNQYSELSGKEYDKKQAQLLLDDIQAMALSIAKDRQGNEILTDMDEWKK
Ga0208646_1000009131	F087754	GAGG	MSYRIEAATKEEWAERALSGEKKLADLKDSIKELFSLLDATEETDEGRAHRPVQIVCVRSDMLMKLENVLATLKSTLGDKK
Ga0208646_1000009134	F024091	GGA	MSKIQAKLNVIMDEIQALMETGPRAHLEDGSNIHKLMSSAGLYFAHMNDENKDYYQAIQYAIEEEMEWKL
Ga0208646_1000009197	F098946	AGGAG	MARITCRTPSTGKPLRIIQADVASTFVTIAEAPDFSVPDASNKFPDRDPTDDTRAIRPGEVFFLTPIAAKNKDTVTRWVEAIFVTEDSQTIEFAKVEVPAGDTALIPLQGRSLLKRVANNASGDTLQVRAEVANMFDIWVSAEEKTSNEHVGVE
Ga0208646_100000935	F056914	AGG	MQMITFTQTIANQIPTGLERYDQIFAAKELILKSDSPCLATCRETLEEIEEIIFQREIKLSFKGN