NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207958_1064980

Scaffold Ga0207958_1064980


Overview

Basic Information
Taxon OID3300025421 Open in IMG/M
Scaffold IDGa0207958_1064980 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010743Metagenome / Metatranscriptome299Y
F082064Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0207958_10649801F010743AGGAGMENLELELKLTVAHVNTVLKHLGAGVYAEVADLIQLLHGQAKPQIESAVVPAPAP
Ga0207958_10649802F082064N/AGRIGRVCLMQYTWEFPQFVVNPSSDGLTNVVTAINWVCTGTNGLVTSSSSGTVQLGTPNPAEFVPYADITQEMAFQWVSQSISITGVEAAIAAQINQISTPQVQPQKPPF

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