Scaffold Ga0207958_1009678

Overview

Basic Information

• Taxon OID: 3300025421
• Scaffold ID: Ga0207958_1009678
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207958_10096781	F061527	N/A	KIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALSESNLKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG
Ga0207958_10096783	F100357	N/A	MDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVKRVIKSVIKLTRRAEEMLRREVIP
Ga0207958_10096784	F045530	N/A	MIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMAHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRGHVDEEGPPRKIFSGIYTKQKIQLN
Ga0207958_10096785	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINVPLNQEFEPSQQGDGDEIFLSANTDI