Scaffold Ga0207958

Basic Information
Taxon OID	3300025421 Open in IMG/M
Scaffold ID	Ga0207958_1006509 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025421 Open in IMG/M

Scaffold ID

Ga0207958_1006509 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2269
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2269

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F020513	Metagenome	223	Y
F032633	Metagenome / Metatranscriptome	179	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207958_10065091	F032633	N/A	HVRVTWNDVPYENEWGEPFFSKDEREQLSRDFMPWERECRINGIPLVGIGVVFPILDWPIYTSKDYDLRNNPLLERLISLDLGIKNDPTVISFFFRDPVEEVIYLHRQVEVPSGETPDEYIHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDNYGLNCIPGAILNPANDQGKVTNHKSYGINIMRMGFERKTLMIHESCKKFLDECRNYAIDAQGRFSDPDDHIDSARIGILALIQGHGEATVSRANTFEAKRFTPVEGKIQRI
Ga0207958_10065092	F020513	AGGA	MLDQKNVVVINLASESGHRGMVEKVAHEVYVKMVDYLRLTQSKNTYNRFSDYHYLQIPVSNSTEPVRGIDYIAPIVTPGIDYATAVITKCLMPDGRVNFEFERLNENDQMGAEQAQEMVMHFLNDKNDAYAVVRDWAQDALLHKNGIVMVMPIREPITMYKEVTGTRDQLRSFEILTAEKGLESKRQNMRKVDVDMQGIMQEVMQPDETEDQQETPGQELNEAIKNNTIYRAKYKLTGYSTNIRVRHVAQHYFVCNPTIPRISDQDFIGFYEPMTIHEAKVLYPYIDLEQFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWVRKDIDDDGNEEIIEVCYSGSYVIYAKEVDFIPLANMCPKPIVGNFFGYSLAERLVPMQEYATGIRRAELSFAMQASTPRIGVNPDFVDAEEIQRGVSAMFVLDRKFDPMKHVFEFAPLQGNLQYVESAMGRFEAEKM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207958_1006509

Overview

Ecosystem & Geography

Associated Families

Sequences