Scaffold Ga0207958_1003630

Overview

Basic Information

• Taxon OID: 3300025421
• Scaffold ID: Ga0207958_1003630
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3314
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016117	Metagenome / Metatranscriptome	249	N
F032144	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207958_10036301	F016117	N/A	MDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFYPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTSNHI
Ga0207958_10036306	F032144	N/A	CFPYFCKNFIFQFSSRLQSYSTPQTKSRFSKKDFIMANYLPQMNIHEVVFHTFITKDCPTFMADKLINLFRVTMMVFNGGSVNYNAVMICNTLMVDFFMRNHRILARGLALEFVDKVLFRLVDNDKFWRFLNTCNVHLFYLNYRTKMMNVICSQLARMYGHENFQAIFSRLTPGIRGREDMGNFYKLP