NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207958_1002161

Scaffold Ga0207958_1002161


Overview

Basic Information
Taxon OID3300025421 Open in IMG/M
Scaffold IDGa0207958_1002161 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4708
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F015585Metagenome / Metatranscriptome253N
F018161Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0207958_100216110F018161N/AMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYLVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEGEKPFPALNSKNHNGN
Ga0207958_10021615F015585N/AMTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCNRIAESREVRELQISPQLGELIKNLAGKGKEWSFILITYPKKSSEVQGKPPSEVKAEPGLSEEEKFFSSPW
Ga0207958_10021619F008351N/AMNSDQETEPLETCSEELVHTVKESVEKLFSLMNTEFSRSSTSNEEEDFSLLKQMCEAKANILKDNPSWSMFDPTTMLAGIAVGRIDWLDIEGPWDGAKNIENYKVIKKHLRELREYNPHWKLDEQDVIKRSTCHNCGTVKSIPEKETPLKEYTGQQKN
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