Scaffold Ga0207958_1000176

Overview

Basic Information

• Taxon OID: 3300025421
• Scaffold ID: Ga0207958_1000176
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22448
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F013058	Metagenome / Metatranscriptome	274	Y
F070626	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207958_100017614	F001059	AGGA	MADLYDIDALKADLPNARELAQFVYDKTGLALDLIGKPKEEQYLAAKNALEGKKVPQDFITTDNPYVDKKDIIPVDEKKPFPPPRSPDLPPESSQIHHFGATNMPHPTNPQSDKKVQIMFRKYDNGVITYQIMGPTELVAVGERINKFGQTVPERYSWDDPRTEEIMVRRQDGSFTEKGRGLYLYCTGEKGASIWPLIDKNIVSVSAKNIADPWA
Ga0207958_100017617	F004695	AGG	MLHKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPVVTPGIDYATAVITKCLMPDGKVNFEFERFSETDQDAAEQATDMVKYFLNNKNNAYQVIRDWAQDALMHKNGIVMVMPVRETITQYKEVTGTRDQLKAFELQTAESGLKALKQQMRKVDVNLQQALQEAMQPGDENEEEQETDPGAELNEAIENNSVYRAKYKLTGMKTNIRIKHVAQHYFVCNPTITQIMYQDFVGFYEPMTIHEAKVQYPFIDMERFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPNKHVYEFQPLQGNLAYVESAMASLKEDNMAMIGMVSPNDTLNPEVMKDGNSGFKLQTALGPNQLIQDEMIKNCAIALQDVIHLVWHTMIQYADDYSIQQLAHVCSEKGGPFLDAQAMANYQFIDRKMINIDLGLGFMSDENRLTRQQLITQCQQQFAQAMMQLTPDMPEMFEKARRPYEDTLRVLGVRHVDAYLPTMDEAIKILQAKAKAPPPMEDQLHQSKMQLNQAQAKEVMAKTGKIAKETQQFDVDNMFDAMAAKKGTLKDVRVD
Ga0207958_100017630	F013058	AGG	MNTLITTLKSKQVQWALVIAILSVLQGFVMELSLTPIHQMIVGCIISVVVVLLRYIELNQTT
Ga0207958_10001768	F070626	AGGAGG	MDIEWSLAHPLHDVDDIVEMADKVFGKEVEGILTTNRDIFRKNVTMTSVYQQFDRSREFLAVARPANISGTGVYSDKLLGFCWFDRGGYTTYAHEEISNAKFHHLDLELPLRTRVKLLSAMIDQHILWANNNGIPVICSTSIRGDHKGFMKLHEKRGFTVNGSYGWIRTKDGLNGIKSSETSNN