Scaffold Ga0208616_1008164

Overview

Basic Information

• Taxon OID: 3300025417
• Scaffold ID: Ga0208616_1008164
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1777
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F055419	Metagenome / Metatranscriptome	138	N
F100356	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208616_10081641	F055419	N/A	RILTRSLKQKRNKSMTETLAPHERLALYNLTDEEIEKIEEELVKHFPREEFAEIHIEVWRTYKETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQQ
Ga0208616_10081643	F100356	AGTAG	MEYRTLKNEIELLESVQRLMNEVNTELDFNDNHMTMLELFSTMKRLKIIQPKWIFKVARTPTLEENIFFRGKKKN
Ga0208616_10081644	F011134	N/A	MSTFAKSEENYDPKETLVDTIKTDLVSQFKVCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK