NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208616_1005633

Scaffold Ga0208616_1005633


Overview

Basic Information
Taxon OID3300025417 Open in IMG/M
Scaffold IDGa0208616_1005633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2196
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F031767Metagenome / Metatranscriptome181N
F033705Metagenome / Metatranscriptome176N
F055458Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208616_10056332F031767GGAMNNNPINQKKIIVKRLERKPRQNYIKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEIALETLHNEKYQKKNVSTKENN
Ga0208616_10056333F019600N/AMYAPDTDTSKLETGYNLDKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYQRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0208616_10056334F033705N/AMEDPVVAIHPLDYLFQGLEAAEVLKLHIVSLIKEEANRLKNLKLKLNSVRKLVEVNQTDSRKLVQIFQEDLNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIHLN
Ga0208616_10056337F055458N/ASMCEILALISAQQKEMIKELEKFPLSKRILVENEVDEANDKLIELLTELQLTFVIETETEDS
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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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