Scaffold Ga0208616_1000005

Overview

Basic Information

• Taxon OID: 3300025417
• Scaffold ID: Ga0208616_1000005
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133304
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (25.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051137	Metagenome	144	Y
F087204	Metagenome	110	Y
F103266	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208616_1000005169	F051137	N/A	MSKNKITTCSYFIKRLRDSGYVTDKVYSDYSNSDPRSWTVVVDPRVSSVMITCFNNHNFFGEEYFEMHDGGQFIPEHFKLKTSSIETLIEYLVKFGINNKSDKY
Ga0208616_1000005174	F087204	N/A	MIITSSQQFENLCNPADALNIEEFEEITLKFGSFVCIAKNKKMNYLNFLKFLVDDKKTQKIYFALLGEYSLQNIIRAYLGSTPNVYKKIFRSKLNQKKNA
Ga0208616_1000005218	F103266	N/A	MIKRPKQEDLIAGKVQLDQYVGNEFNLEGWQLTKVLDDILMCQYVDVNDDGTEIKRGSIWVPINTVNFTWRLAKVILAGPDCKTVKEGDIIVHPSDKGITVQNFNGLKHIVFLNESRIFGVCESIEETNNKKKK