Scaffold Ga0208875_1000164

Overview

Basic Information

• Taxon OID: 3300025410
• Scaffold ID: Ga0208875_1000164
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28765
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F007405	Metagenome	351	Y
F078045	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208875_100016411	F001774	AGGAG	MALKLKLESTQFGVPAPEAYARITNFFGTKDNIQVQVAIHYDQAAREQNLATVREDAHYIAVESLKGDIIPAIYEVLKTFSQYEGAVDC
Ga0208875_100016414	F007405	GGA	MVVTISPTHQFTYDGAQLNIYHADKGEGLPQHDHTYAHATMCNSGSCLVSLEGRSYTIDKNSQPLNLPAGEWHEIEALEDNTVFVNVFAEGKY
Ga0208875_10001642	F078045	AGG	MSYAHFVNNYQRYLKSPNTLSEANKDAYYCSAITYPKEPDHGGLIGFLVALLFVGIFGYGFWVYLGV