Scaffold Ga0208875_1000068

Overview

Basic Information

• Taxon OID: 3300025410
• Scaffold ID: Ga0208875_1000068
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48367
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (71.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F052985	Metagenome / Metatranscriptome	141	Y
F053761	Metagenome / Metatranscriptome	140	Y
F074868	Metagenome / Metatranscriptome	119	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208875_100006826	F074868	AGGTGG	MTTLNKINIGKTLGISAQLENRIIHEFNNGGCKSSYGLSTPQRIALIKILLGGNAPKCECILCI
Ga0208875_100006832	F052985	GGAG	MAKHPPVNSAKWHSVFADDQCKIWQDSNDEIFFKVAVKGQRVKYFYNETGYSDVARYCSDHLGIAYWSVLN
Ga0208875_100006834	F095359	GGTGG	MTIKLGGLGQTISAYCPVCSEKMTHMCIATLGTGRTVRYAWECNACELSLKSDKDGYAHLLTELAYYA
Ga0208875_100006839	F000684	AGGA	MTLQGYTYQIGDLFTTSKTGVTGRITKFSPVSNKVTRVQLQLANGQQRFAMVKTSK
Ga0208875_100006851	F053761	AGGA	MGARTNYTIITTDNPAQNINVYAHWDGEESVANMQKAIRTAMPRINDLSYCTRILVDQLTKHGRDSETGYGLYVGQVDHEEEYDYKEINLVNKTITVGQMQFSIDQFVEVLA