NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208378_1013842

Scaffold Ga0208378_1013842


Overview

Basic Information
Taxon OID3300025407 Open in IMG/M
Scaffold IDGa0208378_1013842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1600
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078138Metagenome116N
F096494Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208378_10138421F078138GGAGMNLSPMIPAMRNAHATHVDFGFLRGIISDNPNFMPSNIDMVLERKGNFLFGEWKREDEEIKTGQKILLKQLAWLHRVLLITGYVDTEPHITLIQEILPTNGNLKVIGKSVEDLKNYIQNWYKDAEEELYD
Ga0208378_10138424F096494GAGGMMNAKELADFLESNMTPTLAIAGDITCDAIVKVLRKQHEDLEYMQGQFERAIEFLAKCNGWSKAK

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