Scaffold Ga0208378_1000121

Overview

Basic Information

• Taxon OID: 3300025407
• Scaffold ID: Ga0208378_1000121
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28894
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010821	Metagenome	298	Y
F040411	Metagenome	161	N
F055534	Metagenome	138	Y
F076681	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208378_10001211	F076681	N/A	LIMITYKWSIPKMTVNPSVDGKTDVVIYADWMCVGTDDVNNLIAAAAGTAKLGEPANPFTAYNNLQEAQVLAWCFEPVTYSITDEDTNVTTTITTNLQPDTEAQVAGQLARQLAAISANPPLPWVKNGNANQP
Ga0208378_100012111	F040411	GAGG	MTEEQIIAEMEKIREAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKND
Ga0208378_100012116	F010821	AGGAGG	MTDFTFLPSDFSSTTITVVANTSAAKEYFAERYGFGCVSVEIRKSAAPEFADSFEFQQLSYE
Ga0208378_100012120	F055534	GGAG	MRDHYNHEELEAARILDLVRMGDDSVPFTTITWCLWVLGDAIGN