Scaffold Ga0208378_1000096

Overview

Basic Information

• Taxon OID: 3300025407
• Scaffold ID: Ga0208378_1000096
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32987
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (72.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055534	Metagenome	138	Y
F056266	Metagenome	137	N
F076681	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208378_100009621	F056266	N/A	MQSETNTILEFMRESEAREWLERYRKKVLELGHGEANAWWFDTIATIEKKRGKKEADNLRQRMNKIRSKA
Ga0208378_100009622	F055534	GAGG	MRENYNHEELEAARILDLVRMGDNTVPWTTITWALWVLGDAVGN
Ga0208378_100009646	F076681	N/A	MAITYKWSIPKMTVNPSVDGKTDVVIYADWLCVGTDDVNNLTAAAAGTAKLGGPANPFTPYNDLQESQVLAWCFEPVTYSITDPITNETTTITTNLQPDTEAQVAGQLARQLAAISANPPLPWIKHDQTN