Scaffold Ga0208035_1000034

Overview

Basic Information

• Taxon OID: 3300025406
• Scaffold ID: Ga0208035_1000034
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50943
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (89.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002998	Metagenome / Metatranscriptome	514	Y
F004581	Metagenome	432	Y
F010440	Metagenome	303	Y
F012741	Metagenome	277	Y
F014350	Metagenome / Metatranscriptome	263	N
F069592	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208035_100003414	F069592	AGG	VNDKYTDHAVLSPLFAQNLVQRLEQLNIVDQFTDASNLALPFAPFQLFQISFSVASSNELPALLGGRSLPRSSRAASSATHPSGKETPQRPHSD
Ga0208035_100003415	F012741	AGGAGG	MFTPQSKNLLGVLSLTNSAGGIFQSLKRQTAAAGFTAYCGIISVALGLWMWLWRDTTLQDKTLTRTVGAALVLSSFFFYQHLRRGFGAFFLILTSTGIGIAVHYSNHPMINGDRPEILAIALIAIGLIAYFVQTRYLPGFLFLLASSVTIIGILWSYPAIFCPIVMVITGGVLIFLGILIRSLAMFNSFM
Ga0208035_100003420	F004581	GGAGG	MQHAEVYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLMNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLKTTAAYSIERAGAHSRQIPPSTRHPVQLER
Ga0208035_100003421	F014350	N/A	MATQVNPLEEHAAGAKAGRRGSKAKEKQAEYTAPADTDFPYAGQEADPQQELDTLENQADAPVRGSYLREKDGYDTLSPEQKAVCDKDFESFLDRLTRPIEAKDGESRQDAILRAKKEYCAARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAATAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0208035_10000343	F010440	AGG	MTVAEAEEKLETLTRNLATSEISLSQRQRYEIQAARCHRFIQRARQKAHRSLASFAETLLGMAADTVFDQNQNAALITAAHLIRCASIEQLAIAVPAAIRETPTDSTRPAGFKCREFTETAECLLGMDNSTFSCECNVAIRTALQLGNIVGLHQIHQSVRRAQADSSELGPKGIVNRLTEICSAYHPKKPASTPRLPDSQNATSLNTAPVSEGHL
Ga0208035_100003437	F002998	GAGG	MSVSVNRVWRHLSDETRVAACKLIWAESTGASKQVLIAALAKEKKLREVFVRKSPIERLVNWTATTMTLPDPIVEEMLKKYLLHEHRAVIISFLELLQIPHSEGMIEENFDYASLTNECVQEAARSLLASADRMGAELYLKYLVLQGGPWEGIEEILPTGE