NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208874_1009600

Scaffold Ga0208874_1009600


Overview

Basic Information
Taxon OID3300025396 Open in IMG/M
Scaffold IDGa0208874_1009600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F032250Metagenome / Metatranscriptome180N
F080871Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208874_10096002F032250GGAMCTVEKEKSFLKMQNEGNSSQAEISRGANTISTQVFKERDTYLQNILQIMEAVREETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF
Ga0208874_10096003F080871N/AMSNPQRFSCSRSTIGFNQPEGEKLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCRIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
Ga0208874_10096004F016361N/AMCKKRELTKEPLIDGVNRPIGERSIQILMSKQLALMALMDTMTITMDLEKGKKVFQEIVSIMKELKNMEARCTC
Ga0208874_10096005F015585N/AMTKFCLHLYSKRLRIKYRLVKLKEIRMSQKNTESNQRLIKVINHCSRIAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGLSEEEKFFSSPW
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Institute for Fundamental Biomedical Research
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