Scaffold Ga0208874_1009102

Overview

Basic Information

• Taxon OID: 3300025396
• Scaffold ID: Ga0208874_1009102
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1839
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010669	Metagenome / Metatranscriptome	300	Y
F012769	Metagenome / Metatranscriptome	277	N
F014232	Metagenome / Metatranscriptome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208874_10091021	F010669	N/A	MELELTRMEQSDDDLTDSSDREDSNMGISETHWPSDPSEVKCRFHAYIAHEQEILAELLSELESEVQTSSENNIVERIKRCFRCIDDIIEYATQFLKQARLIGMRNFTGFYYEMENDAKQANRQALAILSILRRGNLSRLASSVKELVIELDDVRILASRKTLEQVEKTLEEHGTRRTRILRQIERLFP
Ga0208874_10091022	F012769	AGAAG	MKFQDPKFKVRELVKDKFDPILEEEYQEETAMKVFKASIEVIRQSGNKLTEQHYLPYSPEEKEVVIKEVIVQISEWKSRILNRRQKEKITRIDRALSKKILDMLAEYLRSLEETDIAKRQKQLYYVDAVAAITELQINRKFASPERKPVKRKIH
Ga0208874_10091023	F014232	N/A	MSQEKSKIVDDATTKEDTLEGSSHKSHECTCTPSAEYEKATEIGSLTNLIRLVYSIPLVNGLISYKPLERIWNSKKVIRKIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSKYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLSCSEVKRRYQEMLDATSSEESSSEEENKT