NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208874_1009062

Scaffold Ga0208874_1009062


Overview

Basic Information
Taxon OID3300025396 Open in IMG/M
Scaffold IDGa0208874_1009062 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000862Metagenome / Metatranscriptome856Y
F014608Metagenome / Metatranscriptome261N

Sequences

Protein IDFamilyRBSSequence
Ga0208874_10090621F000862N/ANGPSEAQNFNKNDEINSDGEIFLINETLRKPLMHIANRLLGRQRLNFEQLTTPEQNLWSLFEKSDIFEFLTGKKDTVPQFENFLTFGAAPKVNINIQKIAQNLHPILPTQNQIPIQRALSDPTQVTHFLRERKAKIDYKALHLGQQIQNAAKEVKQKCKQMKKSVRKSAKATVTKLAPGAFSPKQQTPASAPASPRPSSSSSWTFWPSK
Ga0208874_10090622F014608N/AMNTVDAVPDPEPKLLDSNFVEPSKLQLLFRPSGKYAASTHYIHVRVPFNFSRLTLMPSIIFDRYHRYIEVWPEPSRTQVEEVAELSRSVLQDKYNDFKNQLDALPQYEVVTRDKRFLDLVSLGMSTAALTLATFNTVKISHLETQIANNNKRLDHLVDITALHEQHFKAVDQKVDDMADLLIKILRYNKVKFAKLTDLMEQKFGTAVAISERLIHTAYSNRLSPGALDHEALLAVVKYVNDIAQNSDMLSFVHQPSDLFLVETSYIYKPEDKTFILVLHVPLVTPHNLMPLYESTQAVTSGPWTTSSRPTTARRSRFTPNGWTGPGP
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