NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208041_1002970

Scaffold Ga0208041_1002970


Overview

Basic Information
Taxon OID3300025393 Open in IMG/M
Scaffold IDGa0208041_1002970 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8017
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameChina: Chengdu, Sichuan
CoordinatesLat. (o)30.66Long. (o)104.06Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055749Metagenome / Metatranscriptome138N
F095523Metagenome / Metatranscriptome105N
F103315Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208041_10029705F095523GGAGGMGVSIPIEYLYLTVGLLVVAVIYIINDKNNTRLYNPEGPLFVKARKKEIPLLRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLASPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNAADLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISLAAG
Ga0208041_10029707F055749GAGGVPGNNNPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPTLDEGSEWNATTNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG
Ga0208041_10029709F103315GGGGGMITVEIYIFLAAVVAAAFVYIFLDLDNRLYGNLFAASFSGILAGLLALWTFNENTVYITTVPETAITVDHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMIFMWFLVGYFVLEIMHESRMPDDEEAYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.