NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208041_1002183

Scaffold Ga0208041_1002183


Overview

Basic Information
Taxon OID3300025393 Open in IMG/M
Scaffold IDGa0208041_1002183 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10786
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameChina: Chengdu, Sichuan
CoordinatesLat. (o)30.66Long. (o)104.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036251Metagenome / Metatranscriptome170Y
F040648Metagenome / Metatranscriptome161Y
F054066Metagenome / Metatranscriptome140N
F101228Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208041_10021831F036251AGGMSAKERQSVLFGDTGVVAPIDTTERVSLTDGTVFVAQRIEVRPSSKYGEYVVIDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGENGALTHDVLCAVKSVVSETTGRRFYTLV
Ga0208041_10021832F040648GAGMAENVINHDEVRLEIDPLLDTAREGVAALEKASSLIHIPIREMAKIQTAIKKMREAALYIENRAYNIPVKSHGTTKSVLKEALKGATQEQIERAYAILSGQDASYETAEGGAMAEDAYYEVPEEGDEE
Ga0208041_10021836F101228GAGGMEEIYLNTNRVRDLWLWVAERWAYFALMFSASILIYYATGNAMQAVYGLILYMVMWLGILWVNQLPHDERVWWKRVVGITIIVLAVTVAITYSPVSALTITGAPDGDQIHWEIADGEPPYTVFVNGIEIVSGYPGTVISTDADPGKQYTAVVMDNESVADATVTGEYYTYPLWVWMLFATLVACLIISIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRMQS
Ga0208041_10021838F054066AGGMFGTTRKPKELNRFRVGKGSPALKAALYRMTNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDGVGAFVMPNEEQMLRQLHDRHALYIPYNINSSAPGEVTDNLEPVAFVYPPLSPAEFQAELEAQTVADLLAETEKDMSWIWLLAGGAVLIFVLILLFGGA
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