Scaffold Ga0208380_1000063

Overview

Basic Information

• Taxon OID: 3300025392
• Scaffold ID: Ga0208380_1000063
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31247
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F032649	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208380_100006331	F002977	GAGG	MKYQVPAEGIMQTNDWGNSKVYRVACECGASDHDHHVWVEADDHEVSVTIYTTVKSNWWSKTRWHAIWTLLTKGYVDTESTVSMGRQQAVNYAHTLLSAVNDVEEFRKKNK
Ga0208380_100006332	F003080	AGGAG	MTTAKDLTEQLINRAKNLQEFVVLREFNHIPCGVVRFDIQHTEGKKARIFVHALTQQEAEQMVDEWFEEDVE
Ga0208380_10000639	F032649	N/A	MYITELSMDERIEKAFSVANYMATLSNQRRIIFEEYDQKLFYYVKGATFKITPELINLTKTILDLGHTTDVPFLDANNYPVIISNVQEFFDNIISVHFEVLNEYTEKFNEIKSKRKVSDIVEL