Basic Information | |
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Taxon OID | 3300025392 Open in IMG/M |
Scaffold ID | Ga0208380_1000006 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 101213 |
Total Scaffold Genes | 232 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (19.83%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011392 | Metagenome / Metatranscriptome | 291 | Y |
F014139 | Metagenome / Metatranscriptome | 265 | N |
F035306 | Metagenome / Metatranscriptome | 172 | N |
F063369 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208380_1000006109 | F063369 | N/A | MTILIIVFVLIGIQRLIKYTTNELDRPYRIIKRSYYDVGKLKTSSYIVQKKVNLLGFRYWTGVACEDGYDSKNVPYFDNFDEAYELLKKCKQQRPLNGIKDEVEVEWNKYPMKIN |
Ga0208380_1000006144 | F011392 | N/A | MNLSIKEINELIYSLGITASKGMMCDKELNVSLLDKLQCELNYRIGLEAIDEEIEVSSHYVSNEEADEDAMNYGIGVIKASEELKKFDDYCTLKQNETSVIDDYRIHLRKLKTPGYASQAILDFVDKKGAASYSEIQSYYRSITGSNSFSHILKNLRIPYKNRKTQRYLAKEGKDYSNAKYVIKVANPSNCVVKDSEAEEIEAKLRSEEARKKLWGDK |
Ga0208380_100000623 | F014139 | N/A | MFRMARVQSTVSWKRYLDSNTTIVKEYLSLLGDEFIIQTFQRILSAYQSKKSQIILIRFKQSGIVSTIESKHYLLALEYLLQLCINLEKYELCREIYNGINLLKSKKRGRVKKTPSLVIS |
Ga0208380_100000632 | F035306 | N/A | MIKMMGIVTGKPKVNESLDIQPIVDKIAKLTDRNDHTGSVLELATFLHDTKAVKLLQAVQQIHNVEGSMPSEISKYRENILKGLVDKVKSKYGADAAKQVDSAF |
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