Scaffold Ga0208380

Basic Information
Taxon OID	3300025392 Open in IMG/M
Scaffold ID	Ga0208380_1000006 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025392 Open in IMG/M

Scaffold ID

Ga0208380_1000006 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	101213
Total Scaffold Genes	232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (19.83%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

101213

Total Scaffold Genes

232 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (19.83%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011392	Metagenome / Metatranscriptome	291	Y
F014139	Metagenome / Metatranscriptome	265	N
F035306	Metagenome / Metatranscriptome	172	N
F063369	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208380_1000006109	F063369	N/A	MTILIIVFVLIGIQRLIKYTTNELDRPYRIIKRSYYDVGKLKTSSYIVQKKVNLLGFRYWTGVACEDGYDSKNVPYFDNFDEAYELLKKCKQQRPLNGIKDEVEVEWNKYPMKIN
Ga0208380_1000006144	F011392	N/A	MNLSIKEINELIYSLGITASKGMMCDKELNVSLLDKLQCELNYRIGLEAIDEEIEVSSHYVSNEEADEDAMNYGIGVIKASEELKKFDDYCTLKQNETSVIDDYRIHLRKLKTPGYASQAILDFVDKKGAASYSEIQSYYRSITGSNSFSHILKNLRIPYKNRKTQRYLAKEGKDYSNAKYVIKVANPSNCVVKDSEAEEIEAKLRSEEARKKLWGDK
Ga0208380_100000623	F014139	N/A	MFRMARVQSTVSWKRYLDSNTTIVKEYLSLLGDEFIIQTFQRILSAYQSKKSQIILIRFKQSGIVSTIESKHYLLALEYLLQLCINLEKYELCREIYNGINLLKSKKRGRVKKTPSLVIS
Ga0208380_100000632	F035306	N/A	MIKMMGIVTGKPKVNESLDIQPIVDKIAKLTDRNDHTGSVLELATFLHDTKAVKLLQAVQQIHNVEGSMPSEISKYRENILKGLVDKVKSKYGADAAKQVDSAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208380_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences