NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208380_1000001

Scaffold Ga0208380_1000001


Overview

Basic Information
Taxon OID3300025392 Open in IMG/M
Scaffold IDGa0208380_1000001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)183822
Total Scaffold Genes210 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (73.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F010472Metagenome303Y
F034037Metagenome / Metatranscriptome175Y
F035629Metagenome / Metatranscriptome171Y
F042897Metagenome157Y
F063289Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208380_1000001101F034037N/AVLFLFLGLNTSMPTYNIWDYFPDKHDFAFTATIRWPGQVNEQLDWIIGIHDVEQWLLTYTGPKYQRWAWNMAVECYDISVAFKYDKHRTLFLLNYS
Ga0208380_1000001150F001008AGGAMSKEKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKTDANPDGYWMHDGDVALNMRTIEALDLIISHFVVTEDTIK
Ga0208380_1000001159F063289N/AMAITHNREEMYTAQQLKRDGWVHDMTELSITECRERAEWCKATFGGVYNPITWDGKWFGAELPFQAGGVTPKRQFVFMFRDDKIYTMYRMMFPN
Ga0208380_1000001185F010472GGAGMSNVLTEVMNSGQPWAAERAQYAMQVHEAVGAGQLSPSEAKEILMDLISTDKLQDAAAEQQAVAALVFGVEQLISLY
Ga0208380_1000001201F042897GGAGMATKEAVAQLAALPERVSVLETKVENINEKLVDLKTDVRDMHDCLDNTRDTVLAQLDKMTDEYRTNAEKYYEHANHLNELQTAQHNELAGKISELEKIKSKWTMYAMVGLAFAAGTGWINAVNFPHILKFLGL
Ga0208380_100000187F035629AGGAVSEKIELKEKLAAVDQNVRELWDAMDTDQQKALKNEFFILNRYVSSGGTTDREIQEHFVLTVNEYFNKNWNLLQKHPKLMWMLLCMCSYNGERVFWHEWIGHKKKTGSNSKKIKFLEELYPNKKRDEVEMLSQLMTDKEIKDLARKYGMDEATIAKKLK

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