Scaffold Ga0208380

Basic Information
Taxon OID	3300025392 Open in IMG/M
Scaffold ID	Ga0208380_1000001 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025392 Open in IMG/M

Scaffold ID

Ga0208380_1000001 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	183822
Total Scaffold Genes	210 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	154 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

183822

Total Scaffold Genes

210 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

154 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F010472	Metagenome	303	Y
F034037	Metagenome / Metatranscriptome	175	Y
F035629	Metagenome / Metatranscriptome	171	Y
F042897	Metagenome	157	Y
F063289	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208380_1000001101	F034037	N/A	VLFLFLGLNTSMPTYNIWDYFPDKHDFAFTATIRWPGQVNEQLDWIIGIHDVEQWLLTYTGPKYQRWAWNMAVECYDISVAFKYDKHRTLFLLNYS
Ga0208380_1000001150	F001008	AGGA	MSKEKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKTDANPDGYWMHDGDVALNMRTIEALDLIISHFVVTEDTIK
Ga0208380_1000001159	F063289	N/A	MAITHNREEMYTAQQLKRDGWVHDMTELSITECRERAEWCKATFGGVYNPITWDGKWFGAELPFQAGGVTPKRQFVFMFRDDKIYTMYRMMFPN
Ga0208380_1000001185	F010472	GGAG	MSNVLTEVMNSGQPWAAERAQYAMQVHEAVGAGQLSPSEAKEILMDLISTDKLQDAAAEQQAVAALVFGVEQLISLY
Ga0208380_1000001201	F042897	GGAG	MATKEAVAQLAALPERVSVLETKVENINEKLVDLKTDVRDMHDCLDNTRDTVLAQLDKMTDEYRTNAEKYYEHANHLNELQTAQHNELAGKISELEKIKSKWTMYAMVGLAFAAGTGWINAVNFPHILKFLGL
Ga0208380_100000187	F035629	AGGA	VSEKIELKEKLAAVDQNVRELWDAMDTDQQKALKNEFFILNRYVSSGGTTDREIQEHFVLTVNEYFNKNWNLLQKHPKLMWMLLCMCSYNGERVFWHEWIGHKKKTGSNSKKIKFLEELYPNKKRDEVEMLSQLMTDKEIKDLARKYGMDEATIAKKLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208380_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences