Scaffold Ga0208743_1000639

Overview

Basic Information

• Taxon OID: 3300025390
• Scaffold ID: Ga0208743_1000639
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8826
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021237	Metagenome / Metatranscriptome	219	Y
F021920	Metagenome / Metatranscriptome	216	Y
F050860	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208743_100063917	F050860	AGGAG	MTDYTKLNDRIVRQAYEASQFILTEELKTRFFQEKIQRAAEMLQARGIDTIVYHQIED
Ga0208743_100063922	F021237	GGTGG	LTKDNKLKYYDYEWDLEPNRILLDEELNIDKLGWKAGDYFQVKNVNGRAMLVKVDPLVKFIKEGNHNE
Ga0208743_10006397	F021920	AGGA	MAKPQQTASELSRTLAGQWSKTEKRAEASRSIMVARKSAHEKVKAFRQNQILNK